Popular GitHub Repositories for Alphafold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Implementation of Alphafold 3 from Google Deepmind in Pytorch

A trainable PyTorch reproduction of AlphaFold 3.

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Trainable AlphaFold implementation in JAX

FrameDiPT: an SE(3) diffusion model for protein structure inpainting

Singularity recipe for AlphaFold

A toolkit developed to predict and analyze PROTAC-mediated protein degradation complexes using AlphaFold3.

Infrastructure template and Jupyter notebooks for running RoseTTAFold on AWS Batch.

Nextflow, WDL and other bioinformatics pipelines for testing our pipeline monitoring platform

Nextflow, WDL and other bioinformatics pipelines for testing our pipeline monitoring platform

✨ Real-time monitoring and performance optimization for scientific HPC pipelines on AWS cloud ☁️

An implementation of Invariant Point Attention from Alphafold 2

A proof-of-concept for using AlphaFold with new amino acid sequences (this may change to a full project in the future).

?Predicting ?RNA 3D Structures ?ML

STRAND: Structure Refinement of RNA-Protein Complexes via Diffusion