bio-text-classification

A full spaCy pipeline and models for scientific/biomedical documents.

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

[NAACL 2021] QAGNN: Question Answering using Language Models and Knowledge Graphs ?

Code for our paper "Multi-scale Guided Attention for Medical Image Segmentation"

[ACL 2022] LinkBERT: A Knowledgeable Language Model ? Pretrained with Document Links

Tools for computational pathology

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

Towards Generalist Biomedical AI

Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.

Image segmentation - general superpixel segmentation & center detection & region growing