DABNet

Easy whole-brain modeling for computational neuroscientists ??????

Brain Imaging Analysis Kit

Fused Window Transformers for fMRI Time Series Analysis (https://www.sciencedirect.com/science/article/pii/S1361841523001019)

Automatic Analysis (aa)

Code and notebooks related to the paper: "Reconstructing Faces from fMRI Patterns using Deep Generative Neural Networks" by VanRullen & Reddy, 2019

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

Interpretable text embeddings by asking LLMs yes/no questions (NeurIPS 2024)

Resting state HRF estimation from BOLD-fMRI signal

Fusion ICA Toolbox (MATLAB)

PyHRF is a set of tools to analyze fMRI data and specifically study hemodynamics.