GraKeL

A curated list of awesome Bioinformatics libraries and software.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A DSL for data-driven computational pipelines

Single-cell analysis in Python. Scales to >100M cells.

Official code repository for GATK versions 4 and up

A full spaCy pipeline and models for scientific/biomedical documents.

CogDL: A Comprehensive Library for Graph Deep Learning (WWW 2023)

Aggregate results from bioinformatics analyses across many samples into a single report.

Unix, R and python tools for genomics and data science

Pytorch Repo for DeepGCNs (ICCV'2019 Oral, TPAMI'2021), DeeperGCN (arXiv'2020) and GNN1000(ICML'2021): https://www.deepgcns.org