Popular GitHub Repositories for Acid

LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.

RiboNucleic Acid (RNA) Language Model

Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.

A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and building/training graph neural network models of protein-nucleic acid binding

Protein structure prediction is the task of predicting the 3-dimensional structure (shape) of a protein given its amino acid sequence and any available supporting information. In this section, we will Install and inspect sidechainnet, a dataset with tools for predicting and inspecting protein structures, complete two simplified implementations of Attention based Networks for predicting protein angles from amino acid sequences, and visualize our predictions along the way.

catELMo: Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions

Recurrent neural network implementations for protein secondary structure prediction and language models

A proof-of-concept for using AlphaFold with new amino acid sequences (this may change to a full project in the future).

AMIDIAM is a novel amino acid-diamond interface dataset. Structure generation & simple demo only; advanced analysis available upon publication.

In this project, I will try to build a model that is able to generate Electronic Dance Music (EDM), mainly the subgeneres of Industrial & Acid Techno.