Popular GitHub Repositories for Biology

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

A list of schools and researchers in computational neuroscience

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Python package for graph neural networks in chemistry and biology

A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

Deep Learning Library for Single Cell Analysis

Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).

DANCE: a deep learning library and benchmark platform for single-cell analysis

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

An extensive library of AI resources including books, courses, papers, guides, articles, tutorials, notebooks, AI field advancements and more.

BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model

Ten Quick Tips for Deep Learning in Biology

一种用于三维分子生成和优化的几何完备扩散生成模型（发表于《自然-通讯化学》）

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

RiboNucleic Acid (RNA) Language Model

BioDynaMo is a high-performance and modular, agent-based simulation platform.