Popular GitHub Repositories for Biomedical Concept Linking

? Industrial-strength Natural Language Processing (NLP) in Python

? Online machine learning in Python

Algorithms for outlier, adversarial and drift detection

Biomni: a general-purpose biomedical AI agent

Large Concept Models: Language modeling in a sentence representation space

A proof-of-concept jupyter extension which converts english queries into relevant python code

Custom Diffusion: Multi-Concept Customization of Text-to-Image Diffusion (CVPR 2023)

A full spaCy pipeline and models for scientific/biomedical documents.

Datasets, SOTA results of every fields of Chinese NLP

Mastering Applied AI, One Concept at a Time

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

A collection of resources on controllable generation with text-to-image diffusion models.

Insightful Tutorials and Papers about Knowledge Graphs

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

A collection of anomaly detection methods (iid/point-based, graph and time series) including active learning for anomaly detection/discovery, bayesian rule-mining, description for diversity/explanation/interpretability. Analysis of incorporating label feedback with ensemble and tree-based detectors. Includes adversarial attacks with Graph Convolutional Network.

ToolUniverse is a collection of biomedical tools designed for AI agents

[NAACL 2021] QAGNN: Question Answering using Language Models and Knowledge Graphs ?

MOA is an open source framework for Big Data stream mining. It includes a collection of machine learning algorithms (classification, regression, clustering, outlier detection, concept drift detection and recommender systems) and tools for evaluation.

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

REBEL is a seq2seq model that simplifies Relation Extraction (EMNLP 2021).