Popular GitHub Repositories for Cell Biology

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics

StarDist - Object Detection with Star-convex Shapes

A list of schools and researchers in computational neuroscience

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Python package for graph neural networks in chemistry and biology

A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

一种基于迭代多大型语言模型的共识框架，用于提高单细胞RNA测序数据中细胞类型注释的准确性

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

Deep Learning Library for Single Cell Analysis

Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).

DANCE: a deep learning library and benchmark platform for single-cell analysis

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

? immunarch [R package] – Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

Scientific Large Language Models: A Survey on Biological & Chemical Domains

Single cell perturbation prediction

CellViT: Vision Transformers for Precise Cell Segmentation and Classification