Popular GitHub Repositories for Dna Nanotechnology

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

? Generative modeling of regulatory DNA sequences with diffusion probabilistic models ?

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Genomic Pre-trained Network

BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model

GENA-LM is a transformer masked language model trained on human DNA sequence.

Code for the tutorial/review paper for RL-based-fine-tuniing. In this code, we especially focus on the design of biological sequences like DNA (enhancers) and RNA (UTRs) design.

DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models

A repository with exploration into using transformers to predict DNA ? transcription factor binding

DNA-GAN: Learning Disentangled Representations from Multi-Attribute Images

:sparkles: :dna: Turing ES - Enterprise Search, Semantic Navigation, Chatbot using Search Engine and Generative AI.

CpGPT: a Foundation Model for DNA Methylation.

GenoArmory: A Unified Evaluation Framework for Adversarial Attacks on Genomic Foundation Models

A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution

Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AISTATS, 2022).

Predicting Future Influenza Virus Sequences with Machine Learning

LSTM for binary DNA sequence classification