Popular GitHub Repositories for Ehr Phenotyping

Auton Survival - an open source package for Regression, Counterfactual Estimation, Evaluation and Phenotyping with Censored Time-to-Events

Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"

Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record

[EMNLP'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records

MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

Doctor Dok is an AI based medical data framework and patient's med vault. Parse any health related PDF/Image to JSON and then use Chat GPT / LLama to discuss it! WARNING: Don't decide on your health based on AI Chat - it's just for Research purposes.

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

NER and Relation Extraction from Electronic Health Records (EHR).

Self-verification for LLMs.

[ACL 2024] This is the code for our paper ”RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records“.

CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks

Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN (IEEE TKDE)

The missing middleware layer in healthcare AI ? ?

Taking off-the-shelf HuggingFace models and training them on EHR data

[ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions on EHR'.

The official repository for the paper: Scalable learning for bridging the species gap in image-based plant phenotyping.

Code to generate realistic synthetic healthcare data with diffusion models

Fact Verification for Clinical Notes with LLMs

Regression in Convolutional Neural Network applied to Plant Leaf Count

A high-performance database and Python reader interface for MEDS datasets