Popular GitHub Repositories for Functional Genomics

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

? A refreshing functional take on deep learning, compatible with your favorite libraries

Fully functional Pokerbot that works on PartyPoker, PokerStars and GGPoker, scraping tables with Open-CV (adaptable via gui) or neural network and making decisions based on a genetic algorithm and montecarlo simulation for poker equity calculation. Binaries can be downloaded with this link:

fklearn: Functional Machine Learning

A collaboratively written review paper on deep learning, genomics, and precision medicine

A simple library for creating complex neural networks

Using an LLM to discover the genetic causes of rare disease

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

? Autonomous agent framework for Elixir. Built for distributed, autonomous behavior and dynamic workflows.

DiffSharp: Differentiable Functional Programming

PyTorch and Tensorflow functional model definitions

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

The J.A.R.V.I.S. Speech API is designed to be simple and efficient, using the speech engines created by Google to provide functionality for parts of the API. Essentially, it is an API written in Java, including a recognizer, synthesizer, and a microphone capture utility. The project uses Google services for the synthesizer and recognizer. While this requires an Internet connection, it provides a complete, modern, and fully functional speech API in Java.

A community-driven knowledge base of practical patterns for Effect-TS.

AWS QnABot is a multi-channel, multi-language conversational interface (chatbot) that responds to your customer's questions, answers, and feedback. The solution allows you to deploy a fully functional chatbot across multiple channels including chat, voice, SMS and Amazon Alexa.

? Generative modeling of regulatory DNA sequences with diffusion probabilistic models ?

No-Frills Functional Programming Lib Augmenting Javascript/Node.js

Powerful and highly functional startpage integrated with chatGPT and hidden under the super minimalistic and animated design (static/hosted/github pages)

✨ ML/AI, Medicine, Genomics, Science Research

A fully functional MCP server and CLI for YouTube