Popular GitHub Repositories for Genes

Agentic Cell type annotation for Anndata objects

Deep learning methods for feature selection in gene expression autism data.

mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens

PiLSL is a pairwise interaction learning-based graph neural network (GNN) model for prediction of synthetic lethality (SL) as anti-cancer drug targets. It learns the representation of pairwise interaction between two genes from a knowledge graph (KG).

Named Entity Recognition for Disorder, Species, Chemical or Drug, Gene and Protein, Enzyme, Anatomy, Biological Process, Molecular Function, Cellular Component, Pathway and microRNAs.

Welcome to Prometheus, the revolutionary AI model that allows you to generate DNA sequences for any creature you can imagine. Whether it’s a pink panda, an elephant-sized turtle, or a completely new lifeform from your wildest dreams, Prometheus decodes the mystery of biology and synthesizes genetic blueprints with precision.

Tutorials for using BRIE

This Python script is designed to provide detailed information on interactions between drugs and genes using the Sydney module for natural language processing and the Drug Gene Interaction Database (DGIdb) API. Users can input the names of three drugs separated by commas and receive information on the interactions with the corresponding genes.

Ontology-based prediction of cancer driver genes

Insert genes into genomes to aid synthetic test data generation

Fine tuning of Mistral model to guess metabolic pathway involved, based on list of genes and compounds

Performing scRNA-Seq analysis using OpenAI API calls