Popular GitHub Repositories for Marker Genes

A Python package for converting PDFs to markdown while extracting images and tables, generate descriptive text descriptions for extracted tables/images using several LLM clients. And many more functionalities. Markdrop is available on PyPI.

This repository enables single and multi-marker detection and tracking using OpenCV with the Passthrough Camera API for Meta Quest 3/3S. It provides sample scenes that support both ArUco(Single/Multi) and ChArUco(Single) markers for augmented reality applications on Quest devices.

This project is about vision based navigation and precision landing of a drone using ROS, PX4 and OpenCV

Open-LLM-Leaderboard: Open-Style Question Evaluation. Paper at https://arxiv.org/abs/2406.07545

This is a lightweight GAN developed for real-time deblurring. The model has a super tiny size and a rapid inference time. The motivation is to boost marker detection in robotic applications, however, you may use it for other applications definitely.

Jupyter notebooks testing different OCR models for document parsing (Dolphin, MonkeyOCR, Marker, Nanonets, ...)

This is the official implementation of the paper "A Neural Network Approach to Missing Marker Reconstruction in Human Motion Capture"

Agentic Cell type annotation for Anndata objects

Deep learning methods for feature selection in gene expression autism data.

mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens

PiLSL is a pairwise interaction learning-based graph neural network (GNN) model for prediction of synthetic lethality (SL) as anti-cancer drug targets. It learns the representation of pairwise interaction between two genes from a knowledge graph (KG).

Named Entity Recognition for Disorder, Species, Chemical or Drug, Gene and Protein, Enzyme, Anatomy, Biological Process, Molecular Function, Cellular Component, Pathway and microRNAs.

Welcome to Prometheus, the revolutionary AI model that allows you to generate DNA sequences for any creature you can imagine. Whether it’s a pink panda, an elephant-sized turtle, or a completely new lifeform from your wildest dreams, Prometheus decodes the mystery of biology and synthesizes genetic blueprints with precision.

Tutorials for using BRIE

BSI technical guidelines converted to markdown using ollama and marker

This Python script is designed to provide detailed information on interactions between drugs and genes using the Sydney module for natural language processing and the Drug Gene Interaction Database (DGIdb) API. Users can input the names of three drugs separated by commas and receive information on the interactions with the corresponding genes.

Ontology-based prediction of cancer driver genes

Insert genes into genomes to aid synthetic test data generation

这是一个指向GitHub上名为VikParuchuri的用户的存储库的链接，该存储库包含名为marker MCP server的项目。

Fine tuning of Mistral model to guess metabolic pathway involved, based on list of genes and compounds