Popular GitHub Repositories for Oncology

a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).

A benchmark of histopathology Foundation Models on multi-stain Immunohistochemistry immune datasets AIM-FM workshop @ NeurIPS 24

Oncogeriatric synthetic data generator for research purposes.

Research code for the investigation of the role of sample size in synthetic data generation

MCP server to query clinicaltrial.gov to identify mutation specific trials

OncoQA-Bot is a Generative AI chatbot that answers questions about HER2-positive breast cancer using a RAG approach.