Popular GitHub Repositories for Pubmed Abstracts

Returns latest research results by crawling arxiv papers and summarizing abstracts. Helps you stay afloat with so many new papers everyday.

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

An agentic AI application that allows you to chat with your papers and gather also information from papers on ArXiv and on PubMed

Extracting scientific claims from biomedical abstracts (powered by AllenNLP)

NLP framework in python for entity recognition and relationship extraction

SciFive: a text-text transformer model for biomedical literature

生物医学模型上下文协议

VerifAI initiative to build open-source easy-to-deploy generative question-answering engine that can reference and verify answers for correctness (using posteriori model)

MCP server for searching and querying PubMed medical papers/research database

GenKit is a library that abstracts away all the differences across generative AI platforms.

一个PubMed MCP服务器

ReCiter: an enterprise open source author disambiguation system for academic institutions

A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework

Pull high-quality, efficient embeddings for PubMed, arXiv and Wikipedia from Huggingface and use for local LLM inference/Retrieval Augmented Generation (RAG)

Enhance your knowledge in medical research with the help of LLM and RAG.

一个可以从arXiv、PubMed、bioRxiv等多个来源搜索和下载学术论文的多源论文搜索下载工具。

Supervised text summarization (title generation/recommendation) based on academic paper abstracts, with Seq2Seq LSTM and T5.

Locally hosted AI Agent Python Tool To Generate Novel Research Hypothesis + Titles + Abstracts

NEREL-BIO: A Dataset of Biomedical Abstracts Annotated with Nested Named Entities