Popular GitHub Repositories for Sequences

Time series Timeseries Deep Learning Machine Learning Python Pytorch fastai | State-of-the-art Deep Learning library for Time Series and Sequences in Pytorch / fastai

A set of tools to visualize and interact with sequences of 3D data.

Implementation of the model from "ProGen: Language Modeling for Protein Generation"

Implementation of MEGABYTE, Predicting Million-byte Sequences with Multiscale Transformers, in Pytorch

Generation of protein sequences and evolutionary alignments via discrete diffusion models

Long-RL: Scaling RL to Long Sequences

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Sign Language Gesture Recognition From Video Sequences Using RNN And CNN

? Generative modeling of regulatory DNA sequences with diffusion probabilistic models ?

Efficient LLM Inference over Long Sequences

The code of our paper "InfLLM: Unveiling the Intrinsic Capacity of LLMs for Understanding Extremely Long Sequences with Training-Free Memory"

TensorFlow Implementation of the paper "End-to-End Relation Extraction using LSTMs on Sequences and Tree Structures" and "Classifying Relations via Long Short Term Memory Networks along Shortest Dependency Paths" for classifying relations

Auto-labeling of point cloud sequences for 3D object detection using an ensemble of experts and temporal refinement

Inference code for PoET: A generative model of protein families as sequences-of-sequences

Implementation of ProteinBERT in Pytorch

An all-new Language Model That Processes Ultra-Long Sequences of 100,000+ Ultra-Fast

AbLang: A language model for antibodies

Code for the tutorial/review paper for RL-based-fine-tuniing. In this code, we especially focus on the design of biological sequences like DNA (enhancers) and RNA (UTRs) design.

Neural Networks for Protein Sequence Alignment

Implementation of Long-Short Transformer, combining local and global inductive biases for attention over long sequences, in Pytorch