Popular GitHub Repositories for Umls

System for Medical Concept Extraction and Linking

A sophisticated smart symptom search engine

[Neurocomputing 2023] Relational Graph Transformer for Knowledge Graph Representation

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

Weakly supervised medical named entity classification

A near real-time named-entity recognizer

Medical Relations and Entities Extraction

Rare disease identification from free-text clinical notes with ontologies and weak supervision

Build a knowledge graph from UMLS Knowledge Sources (2022) with load, visualize and query with Neo4j and Scispacy

:hospital: Clinical NER with UMLS lookup :hospital:

MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)

MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)

Analyzing medical concept distribution of clinical text with Snomed ontology.

UMLS Medical Entity Linking. Adaptation of MedLinker (ECIR 2020) for the Social Domain.

This package computes a variety of semantic similarity metrics between concepts present in ontologies within the UMLS database.